The dna barcoding data and genetic distance of leaf beetles (Coleoptera, Chrysomelidae) in Vietnam

Nguyen Thi Dinh

Abstract


DNA barcoding is a useful tool in identifying species, biodiversity assessment, and revealing phylogenetic relationships of living organisms in the world. However, the DNA barcode data for leaf beetles in Vietnam is lacking. In this study, sixteen DNA sequences of 658 bp of COI gene from nine species (five genera; three subfamilies) of Chrysomelidae in Vietnam were (obtained). Intra- and inter-specific diversities, and phylogenetic relationships of these species were analyzed.

 


Keywords


Biodiversity, COI gene, intra- and inter-species diversity, molecular identification, tropical forest.

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References


Chapman A. D., 2009. Numbers of living species in Australia and the world. Australian Biological Resources Study, Canberra, 80 pp.

Futuyma D. J., 2004. Preface. In: Jolivet P, Santiago-Blay J. A, Schmitt M (eds) New developments in the Biology of Chrysomelidae. SPB Academic Publishing, The Hague, pp. 19–20.

Hebert P. D., Cywinska A., Ball S. L., de Waard J. R., 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270 (1512): 313–321. https://doi.org/10.1098/rspb.2002.2218

Hebert P. D., Penton, E. H., Burns, J. M., Janzen, D. H., Hallwachs W., 2004. Ten species in one: DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. PNAS, 101: 14812–14817.

Hillis D. M., Bull J. J., 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42:182–192.

Jolivet P., 2015. Together with 30 years of symposia on Chrysomelidae! Memories and personal reflections on what we know more about leaf beetles. ZooKeys, 547: 35–61. https://doi.org/10.3897/zookeys.547.7181

Kimoto S., 1989. Chrysomelidae (Coleoptera) of Thailand, Cambodia, Laos and Vietnam. IV. Galerucinae. Esakia, 27: 1–241.

Kimoto S., 1998. Chrysomelidae (Coleoptera) of Thailand, Laos and Vietnam. V. Cassidinae. Bulletin of the Institute of Comparative Studies of International Cultures and Societies, 21: 1–88.

Kimoto S., Gressitt, J. L., 1979. Chrysomelidae (Coleoptera) of Thailand, Cambodia, Laos and Vietnam. I. Sagrinae, Donaciinae, Zeugophorinae, Megalopodinae and Criocerinae. Pacific Insects, 20(2–3): 191–256.

Kimoto S., Takizawa H., 1997. Leaf beetles (Chrysomelidae) of Taiwan. Tokai University Press, Tokyo, 581 pp.

Kumar S., Stecher G., Li M., Knyaz C., Tamura K., 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35:1547–1549.

Magoga G., Sahin D. C., Fontaneto D., Montagna M., 2018. Barcoding of Chrysomelidae of Euro-Mediterranean area: efficiency and problematic species. Science Report, 1:13398. https://doi.org/10.1038/s41598-018-31545-9

Magoga G., Sassi D., Daccordi M., Leonardi C., Mirzaei M., Regalin R., Lozzia G., Montagna M., 2016. Barcoding Chrysomelidae: a resource for taxonomy and biodiversity conservation in the Mediterranean Region. In: Jolivet P, Santiago-Blay J, Schmitt M (eds) Research on Chrysomelidae 6. ZooKeys 597: 27–38. https://doi.org/10.3897/ zookeys.597. 7241

Mora C., Tittensor D. P., Adl S., Simpson A. G., Worm B., 2011. How many species are there on Earth and in the ocean? PLoS Biol. 9(8): e1001127. https://doi.org/ 10.1371/journal.pbio.1001127

Nguyen D. T., Gómez-Zurita J., 2016. Subtle ecological gradient in the tropics triggers high species-turnover in a local geographical scale. PLoS ONE, 11(6): e0156840. https://doi.org/10.1371/ journal.pone.0156840

Nguyen D. T., Gómez-Zurita J., 2017. Diversity and trophic ecology of the Monoleptites group (Chrysomelidae: Galerucinae, Luperini) in the Núi Chúa National Park (S Vietnam) with description of new species of Monolepta Chevrolat and Paleosepharia Laboissière. Journal of Asia-Pacific Entomology, 20: 65–87.

Papadopoulou A., Cardoso A., Gomez-Zurita J., 2013. Diversity and diversification of Eumolpinae (Coleoptera: Chrysomelidae) in New Caledonia. Zoological Journal of the Linnean Societ, 168: 473–495. https://doi.org/10.1111/zoj.12039

Rambaut A., Drummond A. J., Xie D., Baele G., Suchard M. A., 2018. Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67: 901–904. https://doi.org/10.1093/sysbio/ syy032

Ronquist F., Teslenko M., van der Mark P., Ayres D. L., Darling A., Höhna S., Larget B., Liu L., Suchard M. A., Huelsenbeck, J. P., 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61:539–542. https://doi.org/ 10.1093/sysbio/sys029

Schmitt M., 1996. The phylogenetic system of the Chrysomelidae - history of ideas and

present state of knowledge. In: Jolivet PH, Cox ML (eds) Chrysomelidae Biology, Vol. I. The Classification, Phylogeny and Genetics. Amsterdam. SPB Academic Publishing BV, pp. 57–96.

Splipnski S. A., Leschen R. A. B., Lawrence J. F., 2011. Order Coleoptera Linnaeus, 1758. In: Zhang Z.Q. (ed) Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness. Zootaxa, 3148:203–208. https://doi.org/10.1371/journal.pone.0005502.Franz

Stamatakis A., 2006. RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22: 2688–2690.

Warchałowski A., 2011. An introductory review of Lema Fabr. Species from Eastern and Southeastern Asia (Coleoptera: Chrysomelidae: Criocerinae). Genus, 22 (1): 29–93.

Zhang J., Kapli, P., Pavlidis P., Stamatakis A., 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29: 2869–2876. https://doi.org/10.1093/ bioinformatics/btt499




DOI: https://doi.org/10.15625/2615-9023/v42n4.15124 Display counter: Abstract : 36 views. PDF : 38 views.

 

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